Hi greg_733,
This could be a long discussion.
Regarding patched version - yes, you are correct. I can say it is our fault that this version has appeared. Too many licenses had been leaked last time due to our order processing system and crackers got it too. As they said, if the file is executing then it can be cracked, so deal of protection is a time that cracker need to bypass a protection. But, anyway, this does not mean that protection is not safe, because everything depends on an options you are using. For example, if you use Registration Features - Common - Encrypt with Encryption Constant and/or RegCrypt markers, then application can't be cracked at least without valid registration key. Also, if the public key had been patched, it does not mean that protection/virtualization and other features had been bypassed too.
Our company is going forward with the software developers, and we specially make weak places in Enigma Protector itself to eliminate limitation for our clients, but same time we reduce protection for ourselves. For example, Enigma Protector itself, does not check if debugger is present (because developers often use debuggers, and we do not want to limit usage of Enigma Protector together with debuggers), license for Enigma Protector is not locked to particular PC (because developers may have few development PCs and protection, to our mind, should not be limited to one PC only).
So to make the work of our clients more comfortable, we reduce own safety.
I want to remind you, that there is no any protection which public key can't be patched. If you find a protection that is not patched, then probably it is just not popular, but not so strong.
Regarding antivirus false detection. I always recommend to digitally sign protected files with Comodo or VeriSign certificates. This usually solves all the problems with false detections.
Moreover, are you aware of the coming ability for software protection vendors to sign protected files with IEEE Taggant system
http://standards.ieee.org/news/2011/icsg_software.html ? This system will be completed soon, and Enigma Protector will be one the the first of protection system who implement it.
Regarding plans and protection improvements - yes, sure. Huge improvements will be coming soon for protection. I can't share more details, but believe it will be great. Btw, we are always monitoring many forums where the protection of Enigma is being discussed, and we fix every vulnerability very quickly. So the issue with plugins you are talking is already fixed.
Unfortunately, I can't give you comparison between Enigma and Themida, because as a developers of software protection systems we often communicate with each other, help each other, so customer should decide himself what product he prefer.